treedata.TreeData
=================

.. currentmodule:: treedata

.. add toctree option to make autodoc generate the pages

.. autoclass:: TreeData



Attributes table
~~~~~~~~~~~~~~~~

.. autosummary::

    ~TreeData.T
    ~TreeData.X
    ~TreeData.alignment
    ~TreeData.allow_overlap
    ~TreeData.filename
    ~TreeData.has_overlap
    ~TreeData.is_view
    ~TreeData.isbacked
    ~TreeData.isview
    ~TreeData.label
    ~TreeData.layers
    ~TreeData.n_obs
    ~TreeData.n_vars
    ~TreeData.obs
    ~TreeData.obs_names
    ~TreeData.obsm
    ~TreeData.obsp
    ~TreeData.obst
    ~TreeData.raw
    ~TreeData.shape
    ~TreeData.uns
    ~TreeData.var
    ~TreeData.var_names
    ~TreeData.varm
    ~TreeData.varp
    ~TreeData.vart





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~TreeData.chunk_X
    ~TreeData.chunked_X
    ~TreeData.concatenate
    ~TreeData.copy
    ~TreeData.obs_keys
    ~TreeData.obs_names_make_unique
    ~TreeData.obs_vector
    ~TreeData.obsm_keys
    ~TreeData.obst_keys
    ~TreeData.rename_categories
    ~TreeData.strings_to_categoricals
    ~TreeData.to_adata
    ~TreeData.to_df
    ~TreeData.to_memory
    ~TreeData.transpose
    ~TreeData.uns_keys
    ~TreeData.var_keys
    ~TreeData.var_names_make_unique
    ~TreeData.var_vector
    ~TreeData.varm_keys
    ~TreeData.vart_keys
    ~TreeData.write
    ~TreeData.write_csvs
    ~TreeData.write_h5ad
    ~TreeData.write_h5td
    ~TreeData.write_loom
    ~TreeData.write_zarr





Attributes
~~~~~~~~~~



.. autoattribute:: TreeData.T

.. autoattribute:: TreeData.X

.. autoattribute:: TreeData.alignment

.. autoattribute:: TreeData.allow_overlap

.. autoattribute:: TreeData.filename

.. autoattribute:: TreeData.has_overlap

.. autoattribute:: TreeData.is_view

.. autoattribute:: TreeData.isbacked

.. autoattribute:: TreeData.isview

.. autoattribute:: TreeData.label

.. autoattribute:: TreeData.layers

.. autoattribute:: TreeData.n_obs

.. autoattribute:: TreeData.n_vars

.. autoattribute:: TreeData.obs

.. autoattribute:: TreeData.obs_names

.. autoattribute:: TreeData.obsm

.. autoattribute:: TreeData.obsp

.. autoattribute:: TreeData.obst

.. autoattribute:: TreeData.raw

.. autoattribute:: TreeData.shape

.. autoattribute:: TreeData.uns

.. autoattribute:: TreeData.var

.. autoattribute:: TreeData.var_names

.. autoattribute:: TreeData.varm

.. autoattribute:: TreeData.varp

.. autoattribute:: TreeData.vart






Methods
~~~~~~~



.. automethod:: TreeData.chunk_X

.. automethod:: TreeData.chunked_X

.. automethod:: TreeData.concatenate

.. automethod:: TreeData.copy

.. automethod:: TreeData.obs_keys

.. automethod:: TreeData.obs_names_make_unique

.. automethod:: TreeData.obs_vector

.. automethod:: TreeData.obsm_keys

.. automethod:: TreeData.obst_keys

.. automethod:: TreeData.rename_categories

.. automethod:: TreeData.strings_to_categoricals

.. automethod:: TreeData.to_adata

.. automethod:: TreeData.to_df

.. automethod:: TreeData.to_memory

.. automethod:: TreeData.transpose

.. automethod:: TreeData.uns_keys

.. automethod:: TreeData.var_keys

.. automethod:: TreeData.var_names_make_unique

.. automethod:: TreeData.var_vector

.. automethod:: TreeData.varm_keys

.. automethod:: TreeData.vart_keys

.. automethod:: TreeData.write

.. automethod:: TreeData.write_csvs

.. automethod:: TreeData.write_h5ad

.. automethod:: TreeData.write_h5td

.. automethod:: TreeData.write_loom

.. automethod:: TreeData.write_zarr